the created dir is Sqlite3 (with uppercase S) the included files are plugin/sqlite3/*.h (with lowercase s) that doesn't work with linux ... please change this.
i changed the name of the dir to sqlite3 and then synced ... no problem at all (no new dir created or stuff like that) but was with capital letter in uvs2 uppsrc when i downloaded the first time (maybee that snapshot is wrong?).
It seems something strange is going on here .
The dir name is lowercase in my working copy and the sources include uppercase directory.
Checked out this evening.
I noticed another problem. Since I updated my working copy the last time, reference/ImageEncoders was added into the repository and the state of this package is changed inside UVS2. This should not be since I checked it out right before and did not apply any changes to the sources.